Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
amb0533 | amb1395 | amb0533 | amb1395 | NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrite reductase precursor. | 0.901 |
amb0533 | amb2687 | amb0533 | amb2687 | NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrate reductase cytochrome c-type subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. | 0.905 |
amb0533 | amb3014 | amb0533 | amb3014 | NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | NAD(P)H-nitrite reductase. | 0.908 |
amb0533 | amb4165 | amb0533 | amb4165 | NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrite reductase precursor. | 0.901 |
amb0533 | napA | amb0533 | amb2690 | NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Anaerobic dehydrogenase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. | 0.970 |
amb1395 | amb0533 | amb1395 | amb0533 | Nitrite reductase precursor. | NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.901 |
amb1395 | amb2686 | amb1395 | amb2686 | Nitrite reductase precursor. | Denitrification system component nirT. | 0.618 |
amb1395 | amb2687 | amb1395 | amb2687 | Nitrite reductase precursor. | Nitrate reductase cytochrome c-type subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. | 0.960 |
amb1395 | amb2688 | amb1395 | amb2688 | Nitrite reductase precursor. | Polyferredoxin. | 0.752 |
amb1395 | amb3014 | amb1395 | amb3014 | Nitrite reductase precursor. | NAD(P)H-nitrite reductase. | 0.901 |
amb1395 | amb4165 | amb1395 | amb4165 | Nitrite reductase precursor. | Nitrite reductase precursor. | 0.902 |
amb1395 | napA | amb1395 | amb2690 | Nitrite reductase precursor. | Anaerobic dehydrogenase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. | 0.971 |
amb2686 | amb1395 | amb2686 | amb1395 | Denitrification system component nirT. | Nitrite reductase precursor. | 0.618 |
amb2686 | amb2687 | amb2686 | amb2687 | Denitrification system component nirT. | Nitrate reductase cytochrome c-type subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. | 0.992 |
amb2686 | amb2688 | amb2686 | amb2688 | Denitrification system component nirT. | Polyferredoxin. | 0.976 |
amb2686 | amb2689 | amb2686 | amb2689 | Denitrification system component nirT. | Ferredoxin. | 0.906 |
amb2686 | napA | amb2686 | amb2690 | Denitrification system component nirT. | Anaerobic dehydrogenase; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite. | 0.979 |
amb2686 | napD | amb2686 | amb2691 | Denitrification system component nirT. | Uncharacterized protein; Chaperone for NapA, the catalytic subunit of the periplasmic nitrate reductase. It binds directly and specifically to the twin- arginine signal peptide of NapA, preventing premature interaction with the Tat translocase and premature export. | 0.932 |
amb2686 | napF | amb2686 | amb2692 | Denitrification system component nirT. | Ferredoxin; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family. | 0.908 |
amb2687 | amb0533 | amb2687 | amb0533 | Nitrate reductase cytochrome c-type subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family. | NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.905 |
page 1 of 4