Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| amb0429 | amb1990 | amb0429 | amb1990 | 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Pyruvate-flavodoxin oxidoreductase. | 0.524 |
| amb0429 | cbbM | amb0429 | amb2696 | 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Ribulose bisphosphate carboxylase large chain 2; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily. | 0.632 |
| amb0790 | amb2695 | amb0790 | amb2695 | CbbY protein. | Phosphoribulokinase. | 0.623 |
| amb0790 | cbbM | amb0790 | amb2696 | CbbY protein. | Ribulose bisphosphate carboxylase large chain 2; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily. | 0.689 |
| amb1792 | cbbM | amb1792 | amb2696 | Carbonic anhydrase/acetyltransferase; Isoleucine patch superfamily. | Ribulose bisphosphate carboxylase large chain 2; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily. | 0.735 |
| amb1990 | amb0429 | amb1990 | amb0429 | Pyruvate-flavodoxin oxidoreductase. | 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.524 |
| amb1990 | amb2371 | amb1990 | amb2371 | Pyruvate-flavodoxin oxidoreductase. | Predicted phosphatase. | 0.580 |
| amb1990 | amb3103 | amb1990 | amb3103 | Pyruvate-flavodoxin oxidoreductase. | Predicted phosphatase. | 0.580 |
| amb1990 | cbbM | amb1990 | amb2696 | Pyruvate-flavodoxin oxidoreductase. | Ribulose bisphosphate carboxylase large chain 2; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily. | 0.628 |
| amb1990 | pgk | amb1990 | amb0513 | Pyruvate-flavodoxin oxidoreductase. | 3-phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.666 |
| amb2371 | amb1990 | amb2371 | amb1990 | Predicted phosphatase. | Pyruvate-flavodoxin oxidoreductase. | 0.580 |
| amb2371 | amb3103 | amb2371 | amb3103 | Predicted phosphatase. | Predicted phosphatase. | 0.916 |
| amb2371 | cbbM | amb2371 | amb2696 | Predicted phosphatase. | Ribulose bisphosphate carboxylase large chain 2; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily. | 0.913 |
| amb2675 | cbbM | amb2675 | amb2696 | Carbonic anhydrase/acetyltransferase; Isoleucine patch superfamily. | Ribulose bisphosphate carboxylase large chain 2; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily. | 0.735 |
| amb2695 | amb0790 | amb2695 | amb0790 | Phosphoribulokinase. | CbbY protein. | 0.623 |
| amb2695 | cbbM | amb2695 | amb2696 | Phosphoribulokinase. | Ribulose bisphosphate carboxylase large chain 2; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily. | 0.996 |
| amb3103 | amb1990 | amb3103 | amb1990 | Predicted phosphatase. | Pyruvate-flavodoxin oxidoreductase. | 0.580 |
| amb3103 | amb2371 | amb3103 | amb2371 | Predicted phosphatase. | Predicted phosphatase. | 0.916 |
| amb3103 | cbbM | amb3103 | amb2696 | Predicted phosphatase. | Ribulose bisphosphate carboxylase large chain 2; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily. | 0.913 |
| cbbM | amb0429 | amb2696 | amb0429 | Ribulose bisphosphate carboxylase large chain 2; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily. | 5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.632 |
page 1 of 2