Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb2720Hypothetical protein. (396 aa)    
Predicted Functional Partners:
amb2721
Hypothetical protein.
 
     0.900
amb2724
Hypothetical protein.
 
     0.816
amb1937
Hypothetical protein.
 
     0.784
amb1930
Hypothetical protein.
 
     0.782
amb1160
Modification methylase DpnIIB; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.760
amb0363
Modification methylase DpnIIB; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.759
amb2719
Hypothetical protein.
       0.730
amb4508
Hypothetical protein.
  
     0.683
amb0362
Site-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
    0.534
amb2718
Hypothetical protein.
       0.510
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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