STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2801Signal transduction histidine kinase. (572 aa)    
Predicted Functional Partners:
amb2979
FOG: CheY-like receiver.
 
 
 0.808
amb2643
FOG: CheY-like receiver.
 
   
 0.784
amb3470
FOG: CheY-like receiver.
 
   
 0.784
amb1431
CheY-like receiver.
 
   
 0.781
amb3537
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
 
 0.557
dadA
Glycine/D-amino acid oxidase; Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family.
       0.550
amb2800
Hemerythrin-like protein PA1673.
       0.550
amb1110
Signal transduction histidine kinase.
 
 
 
0.518
amb1432
Signal transduction histidine kinase.
 
 
 
0.506
amb2293
Signal transduction histidine kinase.
 
 
 
0.503
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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