STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2851Protein yccU. (140 aa)    
Predicted Functional Partners:
amb2562
O-acetylhomoserine sulfhydrylase.
      0.912
metZ
Cystathionine beta-lyase/cystathionine gamma-synthase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
 
      0.899
amb1294
Cystathionine beta-lyase/cystathionine gamma-synthase.
 
      0.825
msrB
Peptide methionine sulfoxide reductase msrB.
 
      0.720
amb2852
Glutamate decarboxylase and related PLP-dependent protein.
       0.550
amb0852
Enoyl-CoA hydratase/carnithine racemase.
     0.542
amb3496
Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.504
amb2854
Hypothetical protein.
       0.459
fur
Fe2+/Zn2+ uptake regulation protein; Belongs to the Fur family.
  
    0.451
amb1662
Fe2+/Zn2+ uptake regulation protein; Belongs to the Fur family.
  
    0.451
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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