STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2883Uncharacterized phage-associated protein. (189 aa)    
Predicted Functional Partners:
amb2884
Lyzozyme M1; 1,4-beta-N-acetylmuramidase.
       0.773
amb2878
NifU homolog involved in Fe-S cluster formation.
       0.555
amb2879
Selenocysteine lyase.
       0.555
amb2880
Purine catabolism protein pucB.
       0.555
amb2881
Aerobic-type carbon monoxide dehydrogenase; Middle subunit CoxM/CutM homolog.
       0.555
amb2882
Aerobic-type carbon monoxide dehydrogenase; Small subunit CoxS/CutS homolog.
       0.555
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.