STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2889NADH:flavin oxidoreductase; Old Yellow Enzyme family. (371 aa)    
Predicted Functional Partners:
amb2888
Transcriptional regulator.
  
  
 0.792
amb2887
Permease of the major facilitator superfamily.
       0.566
amb2886
Acyl dehydratase.
     
 0.558
amb2885
Predicted xylanase/chitin deacetylase.
       0.556
amb2148
Putative translation initiation inhibitor; yjgF family.
 
   
 0.432
amb0522
NADPH-dependent glutamate synthase beta chain and related oxidoreductase.
      0.423
amb4318
Transcriptional regulator; Similar to M xanthus CarD.
   
    0.420
tuf1
GTPase - translation elongation factor; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.402
amb3148
GTPase - translation elongation factor.
   
    0.402
amb4261
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.402
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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