STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2889NADH:flavin oxidoreductase; Old Yellow Enzyme family. (371 aa)    
Predicted Functional Partners:
amb2888
Transcriptional regulator.
  
  
 0.784
amb2887
Permease of the major facilitator superfamily.
       0.564
amb2886
Acyl dehydratase.
     
 0.558
amb2885
Predicted xylanase/chitin deacetylase.
       0.556
amb4318
Transcriptional regulator; Similar to M xanthus CarD.
   
    0.459
amb4261
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
  
 0.442
amb2148
Putative translation initiation inhibitor; yjgF family.
 
   
 0.433
amb0522
NADPH-dependent glutamate synthase beta chain and related oxidoreductase.
    
 0.424
amb2632
Electron transfer flavoprotein; Beta subunit.
  
 
 0.421
amb3230
Electron transfer flavoprotein; Beta subunit.
  
 
 0.421
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.