Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb2909Predicted lipoprotein involved in nitrous oxide reduction. (182 aa)    
Predicted Functional Partners:
amb2915
Hypothetical protein.
 
     0.889
amb2917
ABC-type transport system, involved in lipoprotein release, permease component.
 
     0.859
amb2910
Uncharacterized conserved protein.
 
     0.831
amb2916
ABC-type antimicrobial peptide transport system, ATPase component.
 
     0.810
amb2911
Cation transport ATPase.
 
     0.801
amb2912
Hypothetical protein.
       0.778
amb2913
Hypothetical protein.
       0.743
amb3076
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
  
 0.680
amb3081
Nitrous oxidase accessory protein.
 
  
 0.621
amb2942
Nitric oxide reductase activation protein.
  
    0.610
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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