STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2914Thiol-disulfide isomerase and thioredoxins. (162 aa)    
Predicted Functional Partners:
amb2915
Hypothetical protein.
 
     0.820
amb3088
Thiol-disulfide isomerase and thioredoxins.
 
   
 0.790
amb2916
ABC-type antimicrobial peptide transport system, ATPase component.
       0.780
amb4200
Cytochrome c biogenesis factor.
     0.707
amb2917
ABC-type transport system, involved in lipoprotein release, permease component.
 
     0.600
amb2918
Hypothetical protein.
       0.542
amb2913
Hypothetical protein.
       0.533
amb2919
Hypothetical protein.
       0.529
amb2912
Hypothetical protein.
       0.514
amb2909
Predicted lipoprotein involved in nitrous oxide reduction.
       0.504
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.