STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2914Thiol-disulfide isomerase and thioredoxins. (162 aa)    
Predicted Functional Partners:
amb2915
Hypothetical protein.
 
     0.822
amb3088
Thiol-disulfide isomerase and thioredoxins.
 
   
 0.790
amb2916
ABC-type antimicrobial peptide transport system, ATPase component.
       0.777
amb4200
Cytochrome c biogenesis factor.
     0.719
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
   0.690
amb2917
ABC-type transport system, involved in lipoprotein release, permease component.
 
     0.604
amb2918
Hypothetical protein.
       0.546
amb2913
Hypothetical protein.
       0.532
amb2919
Hypothetical protein.
       0.529
amb2912
Hypothetical protein.
       0.513
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.