Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb2915Hypothetical protein. (345 aa)    
Predicted Functional Partners:
amb2916
ABC-type antimicrobial peptide transport system, ATPase component.
 
     0.928
amb2917
ABC-type transport system, involved in lipoprotein release, permease component.
 
     0.893
amb2909
Predicted lipoprotein involved in nitrous oxide reduction.
 
     0.889
amb2914
Thiol-disulfide isomerase and thioredoxins.
 
     0.822
amb2910
Uncharacterized conserved protein.
 
     0.593
amb1665
Permease of the major facilitator superfamily.
  
     0.550
amb2918
Hypothetical protein.
       0.546
amb2913
Hypothetical protein.
       0.532
amb2919
Hypothetical protein.
       0.529
amb2705
ABC-type phosphate transport system; Periplasmic component.
  
     0.521
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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