Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amb2925Hypothetical protein. (81 aa)    
Predicted Functional Partners:
thiG
Uncharacterized enzyme of thiazole biosynthesis; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
 
 0.961
thiC
Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.
  
  
 0.863
amb0198
Dinucleotide-utilizing enzyme; Involved in molybdopterin and thiamine biosynthesis family 2.
  
 
 0.841
amb3197
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
  
  
 0.831
amb2926
Hypothetical protein.
       0.796
amb0023
Thiamine monophosphate synthase.
  
  
 0.762
amb2858
Thiamine monophosphate synthase.
  
  
 0.762
amb2924
Uncharacterized NAD(FAD)-dependent dehydrogenase.
       0.752
amb2923
NADH dependant phenylglyoxylate.
       0.706
dadA
Glycine/D-amino acid oxidase; Oxidative deamination of D-amino acids; Belongs to the DadA oxidoreductase family.
  
  
 0.499
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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