STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2928Bacteriophytochrome; Light-regulated signal transduction histidine kinase. (604 aa)    
Predicted Functional Partners:
amb3405
Response regulator containing a CheY-like receiver domain and a GGDEF domain; PAS/PAC domain.
 
    
 0.899
amb2980
Hypothetical 918 kDa protein Y4LL.
  
 
 0.892
amb2830
Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
      0.890
amb2694
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
      0.876
amb1535
Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
    
 0.859
amb1214
Predicted signal transduction protein; EAL and a GGDEF domain; containing a membrane domain.
    
 0.853
amb1104
Predicted signal transduction protein; Containing a membrane domain.
 
      0.839
amb2277
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
    
 0.819
amb3617
Hypothetical protein yddU.
    
 0.815
amb2979
FOG: CheY-like receiver.
 
 
   0.803
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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