Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb2930Sensor protein barA. (1248 aa)    
Predicted Functional Partners:
amb2933
Hypothetical protein.
 
 
0.978
amb2934
C4-dicarboxylate transport sensor protein dctB.
 
 
0.975
amb3329
Hypothetical 1041 kDa protein in hypE 3'region.
  
 
 0.975
amb1110
Signal transduction histidine kinase.
 
 
0.967
amb3878
Sensor protein gacS.
 
 
0.962
amb1432
Signal transduction histidine kinase.
 
 
0.961
amb0650
Predicted periplasmic ligand-binding sensor domain.
 
 
0.960
amb2293
Signal transduction histidine kinase.
 
 
0.959
amb3438
Sensor protein gacS.
 
 
0.958
amb1872
PAS/PAC domain.
 
 
0.957
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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