STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2934C4-dicarboxylate transport sensor protein dctB. (658 aa)    
Predicted Functional Partners:
amb2930
Sensor protein barA.
 
 
0.975
amb1110
Signal transduction histidine kinase.
 
 
 0.919
amb1432
Signal transduction histidine kinase.
 
 0.916
amb0650
Predicted periplasmic ligand-binding sensor domain.
 
 
 0.909
amb1841
Hypothetical protein.
 
 
 0.900
amb2293
Signal transduction histidine kinase.
 
 
 0.899
amb1873
Signal transduction histidine kinase.
 
 
 0.897
amb2932
Methylase of chemotaxis methyl-accepting protein.
 
 
 0.875
amb3878
Sensor protein gacS.
 
 
 
0.864
amb3438
Sensor protein gacS.
 
 
 0.860
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.