STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb2965Membrane carboxypeptidase/penicillin-binding protein PbpC. (785 aa)    
Predicted Functional Partners:
amb2966
Large extracellular alpha-helical protein.
 
   
 0.963
amb3236
Membrane carboxypeptidase/penicillin-binding protein.
  
  
0.933
amb0524
Membrane carboxypeptidase.
  
  
0.931
amb2967
Hypothetical protein.
       0.789
amb2969
Hypothetical protein.
       0.704
amb3867
Membrane protein related to metalloendopeptidase.
  
     0.648
mrdB
Bacterial cell division membrane protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
   
 0.642
amb3516
Cell division protein FtsI/penicillin-binding protein 2.
  
   
 0.555
amb3847
Bacterial cell division membrane protein; Belongs to the SEDS family.
  
   
 0.527
amb2968
Hypothetical protein.
       0.509
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.