Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb2966Large extracellular alpha-helical protein. (1931 aa)    
Predicted Functional Partners:
amb2965
Membrane carboxypeptidase/penicillin-binding protein PbpC.
 
   
 0.961
amb2967
Hypothetical protein.
       0.787
amb2969
Hypothetical protein.
       0.702
amb3416
Transcriptional regulator.
  
     0.546
amb3415
Hypothetical protein.
  
     0.520
amb2968
Hypothetical protein.
       0.509
amb2051
Phosphatidylserine/phosphatidylglycerophosphate/ cardioli pin synthase and related enzyme.
   
    0.430
amb4517
Hypothetical protein.
   
    0.430
amb4518
Phosphatidylserine/phosphatidylglycerophosphate/ cardioli pin synthase and related enzyme.
   
    0.430
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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