Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amb2992Pyrroloquinoline quinone biosynthesis protein E. (373 aa)    
Predicted Functional Partners:
amb2993
Outer membrane protein and related peptidoglycan-associated lipo protein.
 
     0.812
amb1407
Transcriptional regulator.
 
  
 0.723
amb1405
Transcriptional regulator.
 
  
 0.719
amb1404
Transcriptional regulator.
 
  
 0.696
amb1403
Transcriptional regulator.
 
  
 0.693
amb1408
Nitrite reductase precursor.
 
  
 0.653
amb1402
NirF protein.
 
  
 0.648
amb1401
Cytochrome c, mono- and diheme variants.
 
  
 0.636
amb2991
Hypothetical protein.
       0.484
amb4165
Nitrite reductase precursor.
 
  
 0.425
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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