Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| amb1055 | amb3026 | amb1055 | amb3026 | Hypothetical protein. | Uncharacterized conserved protein; Belongs to the HesB/IscA family. | 0.476 |
| amb1055 | amb3027 | amb1055 | amb3027 | Hypothetical protein. | NifU homolog involved in Fe-S cluster formation; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.769 |
| amb3022 | amb3023 | amb3022 | amb3023 | Uncharacterized protein conserved in bacteria. | Ferredoxin. | 0.991 |
| amb3022 | amb3026 | amb3022 | amb3026 | Uncharacterized protein conserved in bacteria. | Uncharacterized conserved protein; Belongs to the HesB/IscA family. | 0.831 |
| amb3022 | amb3027 | amb3022 | amb3027 | Uncharacterized protein conserved in bacteria. | NifU homolog involved in Fe-S cluster formation; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.898 |
| amb3022 | amb3029 | amb3022 | amb3029 | Uncharacterized protein conserved in bacteria. | Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme. | 0.690 |
| amb3022 | amb3030 | amb3022 | amb3030 | Uncharacterized protein conserved in bacteria. | Predicted transcriptional regulator. | 0.445 |
| amb3022 | amb3037 | amb3022 | amb3037 | Uncharacterized protein conserved in bacteria. | Protein implicated in iron transport; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. | 0.649 |
| amb3022 | hscA | amb3022 | amb3024 | Uncharacterized protein conserved in bacteria. | Molecular chaperone; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | 0.911 |
| amb3022 | hscB | amb3022 | amb3025 | Uncharacterized protein conserved in bacteria. | DnaJ-domain-containing protein 1; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.980 |
| amb3022 | iscS | amb3022 | amb3028 | Uncharacterized protein conserved in bacteria. | Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.797 |
| amb3023 | amb3022 | amb3023 | amb3022 | Ferredoxin. | Uncharacterized protein conserved in bacteria. | 0.991 |
| amb3023 | amb3026 | amb3023 | amb3026 | Ferredoxin. | Uncharacterized conserved protein; Belongs to the HesB/IscA family. | 0.966 |
| amb3023 | amb3027 | amb3023 | amb3027 | Ferredoxin. | NifU homolog involved in Fe-S cluster formation; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.976 |
| amb3023 | amb3029 | amb3023 | amb3029 | Ferredoxin. | Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme. | 0.962 |
| amb3023 | amb3030 | amb3023 | amb3030 | Ferredoxin. | Predicted transcriptional regulator. | 0.593 |
| amb3023 | amb3037 | amb3023 | amb3037 | Ferredoxin. | Protein implicated in iron transport; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. | 0.733 |
| amb3023 | hscA | amb3023 | amb3024 | Ferredoxin. | Molecular chaperone; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. | 0.942 |
| amb3023 | hscB | amb3023 | amb3025 | Ferredoxin. | DnaJ-domain-containing protein 1; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.990 |
| amb3023 | iscS | amb3023 | amb3028 | Ferredoxin. | Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.970 |
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