STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3040Ferredoxin. (551 aa)    
Predicted Functional Partners:
amb3561
Nucleoside diphosphate kinase; Belongs to the NDK family.
  
 0.927
amb1555
Pyruvate kinase isozyme G, chloroplast; Belongs to the pyruvate kinase family.
     
 0.904
amb3174
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.904
amb1697
Guanosine polyphosphate pyrophosphohydrolase/synthetase.
     
  0.900
amb2253
Guanosine polyphosphate pyrophosphohydrolase/synthetase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
     
  0.900
amb2392
Predicted pyrophosphatase.
     
  0.900
amb0169
NADH:ubiquinone oxidoreductase; NADH-binding (51 kD) subunit.
  
 
 0.894
amb3393
NAD-reducing hydrogenase diaphorase moiety largesubunit; hoxF homolog.
  
 
 0.894
ribB
Riboflavin biosynthesis protein ribA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
 0.886
amb0176
Ferredoxin-NADP reductase; Root-type isozyme, chloroplast precursor.
  
 
 0.872
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.