STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3055Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. (526 aa)    
Predicted Functional Partners:
amb3138
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
  
 
 
 0.769
amb3057
Hypothetical protein.
       0.733
amb3056
Hypothetical protein.
       0.727
amb3058
Hypothetical protein.
       0.727
amb1002
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
  
     0.692
amb0602
Outer membrane protein and related peptidoglycan-associated protein.
   
 
 0.655
mamE
Trypsin-like serine protease, typically periplasmic; Acts at 2 distinct steps of magnetosome formation; required for correct localization of proteins to the magnetosome while the protease activity is required for maturation of small magnetite crystals into larger, functional ones. The 2 functions are separable by mutation. Probably cleaves at least itself, MamO and MamP; cleavage requires the putative transport domain of MamO (Probable). Involved in localization of some proteins (at least MamA, MamC, MamF, MamI and MamJ) to the magnetosome.
  
     0.644
amb3878
Sensor protein gacS.
 
  
 0.634
amb1004
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
  
     0.623
amb0410
Hypothetical protein.
  
     0.617
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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