STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3057Hypothetical protein. (503 aa)    
Predicted Functional Partners:
amb3056
Hypothetical protein.
       0.773
amb3058
Hypothetical protein.
       0.773
amb3055
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
       0.733
amb3681
Site-specific DNA methylase.
  
     0.624
amb0708
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
 
 
 0.524
amb2057
Site-specific DNA methylase.
  
     0.503
amb2841
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
 
  
 0.448
amb3252
Hypothetical protein.
  
  
 0.442
amb0628
Flagellar biosynthesis/type III secretory pathway ATPase.
  
 
 0.437
mms24
TPR repeat; Probably forms a large homooligomer on which other magnetosome subunits assemble (Probable). Required for formation of functional magnetosomes from pre-existing vesicles, it has a dynamic location in the cell.
 
 
 0.428
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.