Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3057Hypothetical protein. (503 aa)    
Predicted Functional Partners:
amb3056
Hypothetical protein.
       0.773
amb3058
Hypothetical protein.
       0.773
amb3055
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
       0.727
amb3681
Site-specific DNA methylase.
  
     0.624
amb0708
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
 
 
 0.524
amb2057
Site-specific DNA methylase.
  
     0.503
amb4535
Zn-dependent protease with chaperone function.
  
 
 0.455
amb3054
Methyl-accepting chemotaxis protein.
       0.423
amb3252
Hypothetical protein.
  
  
 0.422
amb2336
Metal-dependent hydrolase of the beta-lactamase superfamily I.
 
     0.410
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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