Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3061Outer membrane protein. (531 aa)    
Predicted Functional Partners:
amb3476
Membrane-fusion protein; Multidrug resistance efflux pump.
 
 
 0.876
amb3159
Membrane-fusion protein.
 
 
 0.869
amb2378
Membrane-fusion protein.
 
 
 0.860
amb4057
Membrane-fusion protein.
 
 
 0.828
amb3475
ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.820
amb2542
Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.804
amb3158
Protease secretion ATP-binding protein prtD.
 
  
 0.773
amb3436
Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.761
amb1141
Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.757
amb2377
ABC-type bacteriocin/lantibiotic exporters; N-terminal double-glycine peptidase domain.
 
  
 0.749
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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