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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3100Hypothetical UPF0249 protein TTE0334. (288 aa)    
Predicted Functional Partners:
amb3101
Hypothetical protein.
 
     0.935
amb3099
Putative membrane protein actII-3.
 
     0.891
amb3484
Glycosyltransferase, probably involved in cell wall biogenesis.
 
   
 0.829
amb3483
Fe-S oxidoreductase.
 
   
 0.787
amb1364
Nucleoside-diphosphate-sugar epimerase.
 
   
 0.699
amb3098
Hypothetical protein.
 
     0.634
amb3097
Fe-S oxidoreductase.
     
 0.586
amb1365
Glycosyltransferase; Involved in cell wall biogenesis.
 
   
 0.581
amb0416
Predicted integral membrane protein.
 
     0.570
amb1369
Predicted Fe-S oxidoreductase.
 
   
 0.566
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.