Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3104Uncharacterized protein involved in outer membrane biogenesis. (673 aa)    
Predicted Functional Partners:
amb3103
Predicted phosphatase.
       0.830
amb3105
Chaperone required for the assembly of the mitochondrial F1-ATPase.
       0.757
amb3816
Hypothetical protein.
  
     0.659
amb3861
Hypothetical protein.
  
     0.646
amb0148
Hypothetical protein.
  
   
 0.642
amb3935
Uncharacterized protein conserved in bacteria.
 
  
 0.641
amb3828
Hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
    0.638
amb3189
Hypothetical protein.
  
    0.636
amb4275
Hypothetical protein.
  
     0.617
amb1418
Predicted membrane protein.
  
     0.614
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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