Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3136Hypothetical protein. (318 aa)    
Predicted Functional Partners:
amb3823
Flagellar assembly protein fliX.
  
     0.734
amb0506
Flagellar hook-length control protein.
  
    0.700
amb3041
Uncharacterized protein conserved in bacteria.
  
     0.658
amb0501
FlbE protein.
  
     0.647
amb3750
Flp pilus assembly protein TadG.
  
     0.621
amb3499
Hypothetical protein.
  
     0.611
amb2246
Uncharacterized protein conserved in bacteria.
  
     0.607
amb3836
Hypothetical protein.
  
     0.600
amb4493
Hypothetical protein.
  
     0.596
amb3503
Hypothetical protein.
 
     0.589
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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