STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3138Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. (505 aa)    
Predicted Functional Partners:
amb1708
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
 
 
 0.838
amb1903
ATPase of the AAA+ class.
   
 0.828
amb0410
Hypothetical protein.
  
 
 
 0.781
amb3137
Hypothetical protein.
       0.773
amb3055
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
  
 
 
 0.769
amb3878
Sensor protein gacS.
  
 
 0.759
amb1004
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
  
 
 
 0.732
amb0602
Outer membrane protein and related peptidoglycan-associated protein.
  
 
 0.731
rpoC
DNA-directed RNA polymerase, beta' subunit/160 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  
 0.643
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
 
 0.640
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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