STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3176Probable tartrate dehydrogenase. (358 aa)    
Predicted Functional Partners:
amb3508
Acetolactate synthase; Small (regulatory) subunit.
  
 0.980
leuC
3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
 
 0.968
amb3507
Thiamine pyrophosphate-requiring enzyme.
 0.966
amb2550
Thiamine pyrophosphate-requiring enzyme; Belongs to the TPP enzyme family.
 0.956
amb0792
Thiamine pyrophosphate-requiring enzyme; Belongs to the TPP enzyme family.
 0.952
amb3178
Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain.
  
 
 0.946
amb3179
Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain.
    
 0.941
amb1990
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.937
leuD
3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
  
 0.917
amb2145
627aa long 2-oxoacid--ferredoxin oxidoreductasealpha subunit.
     
 0.908
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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