Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb3232Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (324 aa)    
Predicted Functional Partners:
amb0224
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.652
amb1271
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.631
amb4150
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.608
amb0521
Glutamate synthase [NADPH] large chain precursor.
     
 0.556
amb3231
Acyl-CoA dehydrogenase.
  
  
 0.532
amb0826
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.480
rpoB
DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.478
amb3233
Indolepyruvate oxidoreductase subunit IORA; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
       0.461
amb3234
Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase, gamma subunit.
       0.461
rpoA
DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.434
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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