Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb3246Predicted hydrolase or acyltransferase; Alpha/beta hydrolase superfamily. (265 aa)    
Predicted Functional Partners:
amb3245
Hypothetical protein.
       0.773
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
 
 0.687
amb0802
2-keto-4-pentenoate hydratase.
  
  
 0.518
amb0831
Acyl dehydratase.
 
 
 0.459
amb0947
Hypothetical protein.
    
  0.443
amb4317
Hypothetical protein.
    
  0.443
amb1254
Hypothetical protein.
  
     0.420
amb3247
Hypothetical protein.
       0.420
amb4284
Uncharacterized conserved protein.
  
     0.401
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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