Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
amb3248Outer membrane protein and related peptidoglycan-associated lipo protein. (410 aa)    
Predicted Functional Partners:
amb2489
Outer membrane protein.
 
 
 0.640
amb0606
Uncharacterized protein; Containing LysM domain.
 
  
 0.571
amb3249
Hypothetical protein.
       0.563
amb3716
Parvulin-like peptidyl-prolyl isomerase.
 
   
 0.535
tolB
Periplasmic component of the Tol biopolymer transport system; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.533
amb0025
Hypothetical PE-PGRS family protein Rv1325c/MT1367 precursor; Msp1.
  
 
 0.520
amb2240
TPR repeat; SEL1 subfamily.
  
 
 0.514
amb3138
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
  
 
 0.514
amb0615
Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
   0.489
amb0503
Flagellar biosynthesis/type III secretory pathway lipoprotein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
   
 
 0.488
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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