STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3275RTX toxins and related Ca2+-binding protein. (2065 aa)    
Predicted Functional Partners:
amb3272
Hypothetical protein.
 
    0.944
amb3273
Membrane-fusion protein.
 
    0.944
amb3274
Membrane-fusion protein; Multidrug resistance efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
    0.922
amb3276
Outer membrane protein.
 
  
 0.858
amb3271
Hypothetical protein.
       0.773
amb1140
Outer membrane protein.
 
  
 0.767
amb4059
Outer membrane protein.
 
  
 0.763
amb1143
Hypothetical protein.
 
    0.759
amb0943
Membrane-fusion protein.
 
    0.753
amb1142
Membrane-fusion protein.
 
    0.749
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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