Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3275RTX toxins and related Ca2+-binding protein. (2065 aa)    
Predicted Functional Partners:
amb3272
Hypothetical protein.
 
    0.944
amb3273
Membrane-fusion protein.
 
    0.944
amb3274
Membrane-fusion protein; Multidrug resistance efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
    0.921
amb3276
Outer membrane protein.
 
  
 0.856
amb3271
Hypothetical protein.
       0.773
amb1140
Outer membrane protein.
 
  
 0.765
amb4059
Outer membrane protein.
 
  
 0.761
amb1143
Hypothetical protein.
 
    0.758
amb0943
Membrane-fusion protein.
 
    0.752
amb1142
Membrane-fusion protein.
 
    0.749
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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