STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3277RTX toxins and related Ca2+-binding protein. (1139 aa)    
Predicted Functional Partners:
amb3276
Outer membrane protein.
 
   
 0.927
amb3272
Hypothetical protein.
 
     0.844
amb3273
Membrane-fusion protein.
 
     0.842
amb3274
Membrane-fusion protein; Multidrug resistance efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.753
amb1143
Hypothetical protein.
 
     0.739
amb0943
Membrane-fusion protein.
 
     0.731
amb1142
Membrane-fusion protein.
 
     0.728
amb1140
Outer membrane protein.
 
   
 0.727
amb1993
Cell surface glycoprotein precursor.
 
 
 0.724
amb1275
Type V secretory pathway; Adhesin AidA.
 
 
 0.714
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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