Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
amb3299RTX toxins and related Ca2+-binding protein. (1274 aa)    
Predicted Functional Partners:
amb1277
RTX toxins and related Ca2+-binding protein.
 
  
0.628
amb3475
ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.617
amb2376
ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.594
amb4056
RTX toxins and related Ca2+-binding protein.
 
  
0.574
amb2377
ABC-type bacteriocin/lantibiotic exporters; N-terminal double-glycine peptidase domain.
 
  
 0.572
amb3158
Protease secretion ATP-binding protein prtD.
 
  
 0.562
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
     
 0.540
amb2235
Adenylate cyclase; Family 3.
 
   
 0.536
amb0500
Flagellar motor switch/type III secretory pathway protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
   
 
 0.510
amb4058
ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.504
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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