STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3299RTX toxins and related Ca2+-binding protein. (1274 aa)    
Predicted Functional Partners:
amb3475
ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.612
amb1277
RTX toxins and related Ca2+-binding protein.
 
  
0.603
amb2376
ABC-type protease/lipase transport system, ATPase and permease components.
 
  
 0.588
amb2377
ABC-type bacteriocin/lantibiotic exporters; N-terminal double-glycine peptidase domain.
 
  
 0.566
amb3158
Protease secretion ATP-binding protein prtD.
 
  
 0.556
amb2235
Adenylate cyclase; Family 3.
 
   
 0.550
amb4056
RTX toxins and related Ca2+-binding protein.
 
  
0.546
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
  
  
 0.510
amb3878
Sensor protein gacS.
 
 
 0.506
amb0500
Flagellar motor switch/type III secretory pathway protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
   
 
 0.497
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.