STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3303Predicted redox protein, regulator of disulfide bond formation. (142 aa)    
Predicted Functional Partners:
amb2456
Related to diketogulonate reductase.
  
  
 0.641
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
  
  
 0.615
amb2153
Putative Ser protein kinase.
   
  
 0.604
amb2349
Hypothetical protein.
   
  
 0.587
amb0606
Uncharacterized protein; Containing LysM domain.
   
  
 0.521
amb1873
Signal transduction histidine kinase.
   
  
 0.473
amb2205
Signal transduction histidine kinase.
  
    0.465
amb1466
Predicted ATPase.
   
  
 0.456
amb1947
Predicted ATPase.
   
  
 0.456
amb2936
Predicted ATPase.
   
  
 0.456
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.