Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3329Hypothetical 1041 kDa protein in hypE 3'region. (1510 aa)    
Predicted Functional Partners:
amb0326
Chemotaxis protein histidine kinase and related kinase.
  
 0.998
amb3004
Gliding motility regulatory protein.
  
 0.998
amb3554
Methyl-accepting chemotaxis protein.
 
0.982
amb3102
Methyl-accepting chemotaxis protein.
  
0.981
amb0325
Chemotaxis signal transduction protein.
  
 0.978
amb1962
Chemotaxis signal transduction protein.
  
 0.978
amb1964
Chemotaxis signal transduction protein.
  
 0.978
amb3007
Chemotaxis signal transduction protein.
  
 0.978
amb2930
Sensor protein barA.
  
 
 0.975
amb1466
Predicted ATPase.
 
 
 0.965
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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