STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
amb3349Putative acyl-CoA thioester hydrolase yciA. (113 aa)    
Predicted Functional Partners:
amb0428
Uncharacterized conserved protein; Related to MYG1 family.
   
   0.678
parE
Type IIA topoisomerase, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
       0.645
amb3351
CRP/FNR family transcriptional regulator, anaerobic regulatory protein; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase.
 
     0.621
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
  
 0.504
amb2556
Phosphotransacetylase.
  
  
 0.475
amb1361
Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
   
    0.471
amb1591
Enoyl-acyl-carrier-protein reductase.
   
  
 0.436
amb4226
Enoyl-[acyl-carrier-protein] reductase.
   
  
 0.436
fabZ
3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
  
  
 0.434
amb2317
Pyruvate dehydrogenase E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
  
 0.423
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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