Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amb3351CRP/FNR family transcriptional regulator, anaerobic regulatory protein; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase. (292 aa)    
Predicted Functional Partners:
parE
Type IIA topoisomerase, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
     
 0.775
amb3352
Hypothetical protein.
 
     0.678
amb3577
CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase.
  
     0.645
amb1396
CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase.
  
     0.642
amb3349
Putative acyl-CoA thioester hydrolase yciA.
 
     0.621
amb1857
CRP/FNR family transcriptional regulator, cyclic AMP receptor protein; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase.
  
     0.593
amb2977
CRP/FNR family transcriptional regulator, transcriptional activator FtrB; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase.
  
     0.563
amb1397
CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase.
  
     0.561
amb3736
CRP/FNR family transcriptional regulator, cyclic AMP receptor protein; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase.
  
     0.533
amb3578
cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase.
  
     0.529
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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