STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3384Hypothetical protein. (511 aa)    
Predicted Functional Partners:
amb2236
TPR repeat.
 
  
 0.657
amb3409
FOG: TPR repeat.
 
  
 0.567
amb3383
Methyl-accepting chemotaxis protein.
       0.558
amb2831
Hypothetical protein.
 
  
 0.535
amb3537
Serine phosphatase RsbU, regulator of sigma subunit.
  
 
 0.483
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
 
  
 0.450
amb4019
Predicted methyltransferase; TPR repeat.
 
  
 0.450
amb3896
Hypothetical protein.
   
 
 0.418
amb3041
Uncharacterized protein conserved in bacteria.
  
     0.413
amb3136
Hypothetical protein.
 
    0.404
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.