STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3390ABC-type branched-chain amino acid transport systems, periplasmic component. (455 aa)    
Predicted Functional Partners:
amb2873
Branched-chain amino acid ABC-type transport system; Permease components; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.831
amb1477
Branched-chain amino acid ABC-type transport system; Permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.800
amb3388
Threonine synthase.
       0.773
amb3389
Predicted Zn-dependent peptidase; Belongs to the peptidase M16 family.
       0.773
amb2872
ABC-type branched-chain amino acid transport system; Permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.755
amb2871
ABC-type branched-chain amino acid transport systems, ATPase component.
 
  
 0.637
amb2870
ABC-type branched-chain amino acid transport systems, ATPase component.
 
  
 0.632
amb2148
Putative translation initiation inhibitor; yjgF family.
 
     0.588
amb0180
Ferredoxin oxidoreductase and related 2-oxoacid ferredoxin oxidoreductase; Gamma subunit.
  
    0.566
amb3591
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.520
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.