STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3392Hypothetical protein. (167 aa)    
Predicted Functional Partners:
amb3391
Predicted transcriptional regulator.
   
 
 0.835
amb3393
NAD-reducing hydrogenase diaphorase moiety largesubunit; hoxF homolog.
       0.476
amb3394
NAD-reducing hydrogenase diaphorase moiety small subunit; hoxU homolog.
       0.476
amb3395
NAD-reducing hydrogenase hydrogenase moiety small subunit; hoxY homolog.
       0.476
amb3396
NAD-reducing hydrogenase hydrogenase moiety large subunit; hoxH homolog; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
       0.459
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.427
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
     
 0.407
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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