STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3395NAD-reducing hydrogenase hydrogenase moiety small subunit; hoxY homolog. (183 aa)    
Predicted Functional Partners:
amb3394
NAD-reducing hydrogenase diaphorase moiety small subunit; hoxU homolog.
   
 0.993
amb3396
NAD-reducing hydrogenase hydrogenase moiety large subunit; hoxH homolog; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.992
amb3393
NAD-reducing hydrogenase diaphorase moiety largesubunit; hoxF homolog.
 
 
 
 0.991
amb0169
NADH:ubiquinone oxidoreductase; NADH-binding (51 kD) subunit.
   
 
 0.928
amb3397
[NiFe] hydrogenase (HoxH-specific) C-terminal protease; hoxW homolog.
 
  
 0.916
amb2225
Cytochrome b subunit of the bc complex.
  
 
 0.905
amb0285
Hypothetical protein RP006.
   
 
 0.902
amb1644
Ni,Fe-hydrogenase I large subunit.
  
 
 0.842
amb1114
Ni,Fe-hydrogenase I large subunit.
  
 
 0.751
amb1647
Ni,Fe-hydrogenase I large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
 
 0.751
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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