STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3401Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (168 aa)    
Predicted Functional Partners:
amb1873
Signal transduction histidine kinase.
 
 
 0.874
amb1110
Signal transduction histidine kinase.
 
 
0.870
amb2636
Signal transduction histidine kinase.
 
 
 0.851
amb3048
Signal transduction histidine kinase.
 
 
 0.849
amb0847
Osmosensitive K+ channel histidine kinase.
 
 
 0.848
amb3346
Signal transduction histidine kinase.
 
 
 0.842
amb1434
Signal transduction histidine kinase.
 
 
 0.841
amb4146
Signal transduction histidine kinase.
 
 
 0.837
amb1841
Hypothetical protein.
 
 
 0.836
amb1968
Signal transduction histidine kinase.
 
 
 0.835
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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