Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3409FOG: TPR repeat. (836 aa)    
Predicted Functional Partners:
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
 
  
 0.744
amb3678
Predicted NTPase; NACHT family.
 
     0.704
amb1695
Ankyrin repeat.
 
 0.665
amb0757
TPR repeat.
  
   0.601
amb1903
ATPase of the AAA+ class.
 
 0.579
amb3408
Outer membrane protein and related peptidoglycan-associated lipo protein.
   
   0.579
htpG
Molecular chaperone, HSP90 family; Molecular chaperone. Has ATPase activity.
  
 0.566
amb3384
Hypothetical protein.
 
  
 0.565
amb1418
Predicted membrane protein.
    
 0.534
amb3417
TEX protein.
  
 
 0.527
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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