STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3410Universal stress protein UspA and related nucleotide-binding protein. (269 aa)    
Predicted Functional Partners:
amb3411
Hypothetical pseudouridine synthase in lpd 3'region.
     
 0.534
amb3412
Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.523
amb3413
Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.518
amb3414
Transcriptional regulator.
  
  
 0.514
amb2698
Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.474
amb1528
Hypothetical protein Rv2004c/MT2060/Mb2027c.
 
    0.470
amb3710
Histone acetyltransferase HPA2 and related acetyltransferase.
 
    0.463
amb4342
Hypothetical protein.
   
  
 0.440
amb4556
Methylated DNA-protein cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
  
    0.433
amb0262
4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family.
 
     0.410
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.