Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3438Sensor protein gacS. (1117 aa)    
Predicted Functional Partners:
amb1116
Serine phosphatase RsbU regulator sigma subunit.
 
 
0.978
amb1110
Signal transduction histidine kinase.
 
 
0.969
amb3878
Sensor protein gacS.
 
 
0.967
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
  
 
 0.965
amb1432
Signal transduction histidine kinase.
 
 
0.962
amb3520
Serine phosphatase RsbU, regulator of sigma subunit.
  
  
 0.962
amb0650
Predicted periplasmic ligand-binding sensor domain.
 
 
0.960
amb1841
Hypothetical protein.
 
 
0.958
amb2293
Signal transduction histidine kinase.
 
 
0.958
amb2930
Sensor protein barA.
 
 
0.958
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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