Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3444Carbohydrate-selective porin. (473 aa)    
Predicted Functional Partners:
amb3101
Hypothetical protein.
  
     0.719
amb3483
Fe-S oxidoreductase.
  
     0.675
amb4173
Hypothetical protein.
  
     0.611
amb0231
TRAP-type uncharacterized transport system; Periplasmic component.
  
     0.563
amb3099
Putative membrane protein actII-3.
  
     0.535
amb1368
Nucleoside phosphorylase.
  
     0.528
amb0416
Predicted integral membrane protein.
  
     0.518
amb3484
Glycosyltransferase, probably involved in cell wall biogenesis.
  
     0.503
amb3421
Hypothetical protein.
  
   
 0.430
amb2901
Hypothetical protein.
  
     0.415
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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