STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3444Carbohydrate-selective porin. (473 aa)    
Predicted Functional Partners:
amb3101
Hypothetical protein.
  
     0.719
amb3483
Fe-S oxidoreductase.
  
     0.675
amb4173
Hypothetical protein.
  
     0.611
amb0602
Outer membrane protein and related peptidoglycan-associated protein.
     
 0.599
amb0941
Carbohydrate-selective porin.
  
  
 
0.585
amb0231
TRAP-type uncharacterized transport system; Periplasmic component.
  
     0.563
amb4412
Hypothetical protein.
     
  0.540
amb3099
Putative membrane protein actII-3.
  
     0.535
amb1368
Nucleoside phosphorylase.
  
     0.528
amb0416
Predicted integral membrane protein.
  
     0.518
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.