STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3449Hypothetical protein. (129 aa)    
Predicted Functional Partners:
amb3448
Hypothetical protein.
   0.998
amb3453
Serine phosphatase RsbU, regulator of sigma subunit.
 
    0.863
amb0187
Serine phosphatase RsbU.
 
    0.828
amb3446
Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.773
amb3447
Signal transduction histidine kinase.
       0.773
amb1328
GGDEF domain.
  
   0.662
amb2530
FOG: GGDEF domain.
  
   0.662
amb3563
C4-dicarboxylate transport sensor protein dctB.
  
   0.662
amb4344
Response regulator containing a CheY-like receiver domain and a GGDEF domain.
  
   0.662
amb0438
Serine phosphatase RsbU; Regulator of sigma subunit.
 
    0.563
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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