STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3464Transcriptional regulator containing GAF; AAA-type ATPase, and DNA binding domains. (570 aa)    
Predicted Functional Partners:
amb3937
DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.859
amb2205
Signal transduction histidine kinase.
 
 
 
 0.828
amb3465
Predicted protein tyrosine phosphatase.
       0.773
amb1561
Nitrogenase stabilizing/protective protein nifW.
 
   
 0.685
amb1582
Putative nifZ protein.
 
   
 0.682
amb1564
NifQ protein.
 
   
 0.650
amb0695
Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
     
 0.624
amb1583
FeMo cofactor biosynthesis protein nifB.
 
   
 0.621
amb1581
Protein fixU homolog.
 
   
 0.569
amb1872
PAS/PAC domain.
 
 
 
 0.547
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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