Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amb3464Transcriptional regulator containing GAF; AAA-type ATPase, and DNA binding domains. (570 aa)    
Predicted Functional Partners:
amb2205
Signal transduction histidine kinase.
 
 
 
 0.894
amb3937
DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.862
amb3313
Signal transduction histidine kinase.
   
 
 0.783
amb3465
Predicted protein tyrosine phosphatase.
       0.773
amb2282
Uptake hydrogenase.
 
 
 
 0.759
amb1050
Signal transduction histidine kinase.
   
 
 0.729
amb1582
Putative nifZ protein.
 
   
 0.725
amb0896
C4-dicarboxylate transport sensor protein dctS.
   
 
 0.717
amb2934
C4-dicarboxylate transport sensor protein dctB.
   
 
 0.717
amb2954
Signal transduction histidine kinase.
   
 
 0.717
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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