Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb3465Predicted protein tyrosine phosphatase. (189 aa)    
Predicted Functional Partners:
amb3464
Transcriptional regulator containing GAF; AAA-type ATPase, and DNA binding domains.
       0.773
amb4267
Hypothetical protein.
  
     0.588
amb1448
Uncharacterized protein; Conserved in bacteria.
  
     0.545
amb3875
Hypothetical protein.
  
     0.538
amb4270
Hypothetical protein.
  
     0.506
amb3463
Hypothetical protein.
       0.480
amb4269
Hypothetical protein.
  
     0.463
amb4095
Predicted SAM-dependent methyltransferase.
  
     0.455
amb4281
Hypothetical protein.
  
     0.446
amb4229
Predicted transcriptional regulator; Belongs to the peptidase S24 family.
  
     0.419
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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