STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb3482ATPase related to the helicase subunit of the Holliday junction resolvase. (430 aa)    
Predicted Functional Partners:
amb2085
Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1.
      0.910
amb3481
Trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.
       0.837
amb3026
Uncharacterized conserved protein; Belongs to the HesB/IscA family.
 
      0.715
amb4254
Superfamily II DNA helicase.
  
 
 0.707
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.691
amb0016
DNA segregation ATPase FtsK/SpoIIIE; Related protein.
  
 0.690
amb0665
Transcriptional regulator.
      0.599
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
  
 0.575
amb3480
Uncharacterized conserved protein.
       0.502
amb3805
Hypothetical pseudouridine synthase in lpd 3'region.
     0.462
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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